Ok, the indentation issues in WordPress 2.8 were caused by another plugin, SyntaxHighlighter Evolved. I upgraded to SyntaxHighlighter Evolved from Syntaxhighlighter Plus as Evolved claimed to have support for WordPress 2.8 whereas Plus is apparently not being updated anymore.
The next question I have is, now that WordPress has syntax highlighting in the backend with the code editor, can we use this function in our posts to have the native code highlighter work rather then needing a plugin?
One reply on “WordPress 2.8 Indentation Issues”
I am now using SyntaxHighlighter Plus in WordPress 2.8 without issue.